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1

REGULATION OF BACTERIAL GENE EXPRESSION BY RIBOSWITCHES

Winkler, Wade C., Breaker, Ronald R.

Journal:

Annual Review of Microbiology

Year:

2005

Language:

english

File:

PDF, 747 KB

english, 2005

2

Riboswitches and the RNA World

Journal:

Cold Spring Harbor Perspectives in Biology

Year:

2012

Language:

english

File:

PDF, 1013 KB

english, 2012

3

Emergence of a Replicating Species from an in vitro RNA Evolution Reaction

Ronald R. Breaker and Gerald F. Joyce

Journal:

Proceedings of the National Academy of Sciences

Year:

1994

Language:

english

File:

PDF, 1.04 MB

english, 1994

4

Former Orphan Riboswitches Reveal Unexplored Areas of Bacterial Metabolism, Signaling and Gene Control Processes

Sherlock, Madeline, Breaker, Ronald R

Journal:

Year:

2020

Language:

english

File:

PDF, 1.13 MB

english, 2020

5

A DNA enzyme that cleaves RNA

Ronald R. Breaker, Gerald F. Joyce

Journal:

Chemistry & Biology

Year:

1994

Language:

english

File:

PDF, 911 KB

english, 1994

6

Thiamine Pyrophosphate Riboswitches Are Targets for the Antimicrobial Compound Pyrithiamine

Narasimhan Sudarsan, Smadar Cohen-Chalamish, Shingo Nakamura, Gail Mitchell Emilsson, Ronald R. Breaker

Journal:

Chemistry & Biology

Year:

2005

Language:

english

File:

PDF, 497 KB

english, 2005

7

DNA enzymes

Breaker, Ronald R.

Journal:

Nature Biotechnology

Year:

1997

File:

PDF, 1.24 MB

1997

8

Gene regulation by riboswitches

Mandal, Maumita, Breaker, Ronald R.

Journal:

Nature Reviews Molecular Cell Biology

Year:

2004

Language:

english

File:

PDF, 394 KB

english, 2004

9

The Structural and Functional Diversity of Metabolite-Binding Riboswitches

Roth, Adam, Breaker, Ronald R.

Journal:

Annual Review of Biochemistry

Year:

2009

Language:

english

File:

PDF, 1.10 MB

english, 2009

10

Riboswitches as versatile gene control elements

Brian J Tucker, Ronald R Breaker

Journal:

Current Opinion in Structural Biology

Year:

2005

Language:

english

File:

PDF, 208 KB

english, 2005

11

Importance of the Debye Screening Length on Nanowire Field Effect Transistor Sensors

Stern, Eric, Wagner, Robin, Sigworth, Fred J., Breaker, Ronald, Fahmy, Tarek M., Reed, Mark A.

Journal:

Year:

2007

Language:

english

File:

PDF, 177 KB

english, 2007

12

MOLECULAR BIOLOGY: Making Catalytic DNAs

Journal:

Year:

2000

Language:

english

File:

PDF, 832 KB

english, 2000

13

Integron attI1 Sites, Not Riboswitches, Associate with Antibiotic Resistance Genes

Roth, Adam, Breaker, Ronald R.

Journal:

Year:

2013

Language:

english

File:

PDF, 79 KB

english, 2013

14

A highly specialized flavin mononucleotide riboswitch responds differently to similar ligands and confers roseoflavin resistance to Streptomyces davawensis

Pedrolli, D. B., Matern, A., Wang, J., Ester, M., Siedler, K., Breaker, R., Mack, M.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.89 MB

english, 2012

15

The Expanding View of RNA and DNA Function

Breaker, Ronald R., Joyce, Gerald F.

Journal:

Chemistry & Biology

Year:

2014

Language:

english

File:

PDF, 605 KB

english, 2014

16

Kinetics of RNA Degradation by Specific Base Catalysis of Transesterification Involving the 2‘-Hydroxyl Group

Li, Yingfu, Breaker, Ronald R.

Journal:

Journal of the American Chemical Society

Year:

1999

Language:

english

File:

PDF, 110 KB

english, 1999

17

The Kinetics of Ligand Binding by an Adenine-Sensing Riboswitch

Wickiser, J. Kenneth, Cheah, Ming T., Breaker, Ronald R., Crothers, Donald M.

Journal:

Year:

2005

Language:

english

File:

PDF, 1008 KB

english, 2005

18

Skin Cancer Associated With the Use of Sorafenib and Sunitinib for Renal Cell Carcinoma

Breaker, Kathryn, Naam, Mary, La Rosa, Francisco G., Flaig, Insley P., Flaig, Thomas W.

Journal:

Dermatologic Surgery

Year:

2013

Language:

english

File:

PDF, 63 KB

english, 2013

19

Bacterial Riboswitches Cooperatively Bind Ni2+ or Co2+ Ions and Control Expression of Heavy Metal Transporters

Furukawa, Kazuhiro, Ramesh, Arati, Zhou, Zhiyuan, Weinberg, Zasha, Vallery, Tenaya, Winkler, Wade C., Breaker, Ronald R.

Journal:

Year:

2015

Language:

english

File:

PDF, 3.17 MB

english, 2015

20

Biochemical analysis of pistol self-cleaving ribozymes

Harris, Kimberly A., Lünse, Christina E., Li, Sanshu, Brewer, Kenneth I., Breaker, Ronald R.

Journal:

Year:

2015

Language:

english

File:

PDF, 673 KB

english, 2015

21

Riboswitches and Translation Control

Breaker, Ronald R.

Journal:

Cold Spring Harbor Perspectives in Biology

Year:

2018

Language:

english

File:

PDF, 654 KB

english, 2018

22

A bacterial riboswitch class senses xanthine and uric acid to regulate genes associated with purine oxidation

Yu, Diane, Breaker, Ronald R

Journal:

Year:

2020

File:

PDF, 2.78 MB

2020

23

Molecular-Recognition Characteristics of SAM-Binding Riboswitches

Jinsoo Lim, Wade C. Winkler, Shingo Nakamura, Valerie Scott, Ronald R. Breaker

Journal:

Angewandte Chemie

Year:

2006

Language:

english

File:

PDF, 330 KB

english, 2006

24

Characteristics of Ligand Recognition by a glmS Self-Cleaving Ribozyme

Jinsoo Lim, Beth C. Grove, Adam Roth, Ronald R. Breaker

Journal:

Angewandte Chemie

Year:

2006

Language:

english

File:

PDF, 257 KB

english, 2006

25

Molecular-Recognition Characteristics of SAM-Binding Riboswitches

Jinsoo Lim, Wade C. Winkler, Shingo Nakamura, Valerie Scott, Ronald R. Breaker

Journal:

Angewandte Chemie International Edition

Year:

2006

Language:

english

File:

PDF, 330 KB

english, 2006

26

Characteristics of Ligand Recognition by a glmS Self-Cleaving Ribozyme

Jinsoo Lim, Beth C. Grove, Adam Roth, Ronald R. Breaker

Journal:

Angewandte Chemie International Edition

Year:

2006

Language:

english

File:

PDF, 257 KB

english, 2006

27

Genetic Control by Metabolite-Binding Riboswitches

Wade C. Winkler, Ronald R. Breaker

Journal:

Year:

2003

Language:

english

File:

PDF, 301 KB

english, 2003

28

ChemInform Abstract: In vitro Selection of Catalytic Polynucleotides

Journal:

Year:

1997

File:

PDF, 24 KB

1997

29

Genetic Control by Metabolite-Binding Riboswitches

Wade C. Winkler, Ronald R. Breaker

Journal:

Year:

2003

File:

PDF, 51 KB

2003

30

A universal adapter for chemical synthesis of DNA or RNA on any single type of solid support

M.E. Schwartz, R.R. Breaker, G.T. Asteriadis, G.R. Gough

Journal:

Tetrahedron Letters

Year:

1995

Language:

english

File:

PDF, 224 KB

english, 1995

31

A DNA enzyme with Mg2+-dependent RNA phosphoesterase activity

Ronald R. Breaker, Gerald F. Joyce

Journal:

Chemistry & Biology

Year:

1995

Language:

english

File:

PDF, 1.86 MB

english, 1995

32

Structural Basis for Discriminative Regulation of Gene Expression by Adenine- and Guanine-Sensing mRNAs

Alexander Serganov, Yu-Ren Yuan, Olga Pikovskaya, Anna Polonskaia, Lucy Malinina, Anh Tuân Phan, Claudia Hobartner, Ronald Micura, Ronald R. Breaker, Dinshaw J. Patel

Journal:

Chemistry & Biology

Year:

2004

Language:

english

File:

PDF, 819 KB

english, 2004

33

A Eubacterial Riboswitch Class That Senses the Coenzyme Tetrahydrofolate

Tyler D. Ames, Dmitry A. Rodionov, Zasha Weinberg, Ronald R. Breaker

Journal:

Chemistry & Biology

Year:

2010

Language:

english

File:

PDF, 363 KB

english, 2010

34

Establishing an objective basis for image compositing in satellite oceanography

Laurence C. Breaker, Edward M. Armstrong, Charles A. Endris

Journal:

Remote Sensing of Environment

Year:

2010

Language:

english

File:

PDF, 7.20 MB

english, 2010

35

A Neural Network Multiparameter Algorithm for SSM/I Ocean Retrievals: Comparisons and Validations

Vladimir M. Krasnopolsky, William H. Gemmill, Laurence C. Breaker

Journal:

Remote Sensing of Environment

Year:

2000

Language:

english

File:

PDF, 886 KB

english, 2000

36

GOES-8 Imagery as a New Source of Data to Conduct Ocean Feature Tracking

Laurence C Breaker, Vladimir M Krasnopolsky, Eileen M Maturi

Journal:

Remote Sensing of Environment

Year:

2000

Language:

english

File:

PDF, 661 KB

english, 2000

37

Are engineered proteins getting competition from RNA?

Ronald R Breaker

Journal:

Current Opinion in Biotechnology

Year:

1996

Language:

english

File:

PDF, 730 KB

english, 1996

38

Rapid synthesis of oligoribonucleotides using 2′-O-(o-nitrobenzyloxymethyl)-protected monomers

M.E. Schwartz, R.R. Breaker, G.T. Asteriadis, J.S. deBear, G.R. Gough

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

1992

Language:

english

File:

PDF, 566 KB

english, 1992

39

Characterization of a DNA-Cleaving deoxyribozyme

Nir Carmi, Ronald R. Breaker

Journal:

Bioorganic & Medicinal Chemistry

Year:

2001

Language:

english

File:

PDF, 1.20 MB

english, 2001

40

Genetic Control by a Metabolite Binding mRNA

Ali Nahvi, Narasimhan Sudarsan, Margaret S Ebert, Xiang Zou, Kenneth L Brown, Ronald R Breaker

Journal:

Chemistry & Biology

Year:

2002

Language:

english

File:

PDF, 397 KB

english, 2002

41

Rational design of allosteric ribozymes

Jin Tang, Ronald R. Breaker

Journal:

Chemistry & Biology

Year:

1997

Language:

english

File:

PDF, 1.96 MB

english, 1997

42

DNA aptamers and DNA enzymes

Ronald R Breaker

Journal:

Current Opinion in Chemical Biology

Year:

1997

Language:

english

File:

PDF, 561 KB

english, 1997

43

R2R - software to speed the depiction of aesthetic consensus RNA secondary structures

Zasha Weinberg, Ronald R Breaker

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 557 KB

english, 2011

44

Production of RNA by a polymerase protein encapsulated within phospholipid vesicles

Ajoy C. Chakrabarti, Ronald R. Breaker, Gerald F. Joyce, David W. Deamer

Journal:

Journal of Molecular Evolution

Year:

1994

Language:

english

File:

PDF, 663 KB

english, 1994

45

Self-Incorporation of coenzymes by ribozymes

Ronald R. Breaker, Gerald F. Joyce

Journal:

Journal of Molecular Evolution

Year:

1995

Language:

english

File:

PDF, 876 KB

english, 1995

46

Deoxyribozymes: new activities and new applications

G. M. Emilsson, R. R. Breaker

Journal:

Cellular and Molecular Life Sciences

Year:

2002

Language:

english

File:

PDF, 280 KB

english, 2002

47

The 154-year record of sea level at San Francisco: extracting the long-term trend, recent changes, and other tidbits

Laurence C. Breaker, Alexander Ruzmaikin

Journal:

Climate Dynamics

Year:

2011

Language:

english

File:

PDF, 925 KB

english, 2011

48

Colonic pneumatosis and intestinal perforations with sunitinib treatment for renal cell carcinoma

Thomas W. Flaig, Fernando J. Kim, Francisco G. La Rosa, Kathryn Breaker, Jonathan Schoen, Paul D. Russ

Journal:

Investigational New Drugs

Year:

2009

Language:

english

File:

PDF, 309 KB

english, 2009

49

Sea level variations in the regional seas around Taiwan

Yu-Heng Tseng, Larry C. Breaker, Emmy T. -Y. Chang

Journal:

Journal of Oceanography

Year:

2010

Language:

english

File:

PDF, 480 KB

english, 2010

50

Tidal and Nontidal Oscillations in Elkhorn Slough, CA

Laurence C. Breaker, William W. Broenkow, William E. Watson, Young-Heon Jo

Journal:

Estuaries and Coasts

Year:

2008

Language:

english

File:

PDF, 747 KB

english, 2008

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